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Basic Parameters
Distinct Protein found in Refseq Dataset ( >= )
Length of the longest isoform ( <= )
Length of the shortest isoform ( >= )
Maximum number of Cys residues for any protein product ( <= )
Number of isoforms containting transmembrane regions ( < )
Gene 3D Structure Parameters
Maximum overlap between any template and any isoform ( >= )
Maximum %identity between any template and any isoform ( >= )
Total number of pdbhomologs with escore > 0.001 ( >= )
Number of pdbhomologs with idenity > 90 ( >= )
Alternative Splicing Effect on 3D Structure Parameters
Alternative splicing results in change in %IDENTITY with structural template by less than X% ( <= )
Alternative splicing results in change in OVERLAP coverage with templage by at least X amino acids ( >= )
Max % identity between any isoform and template ( effecting alt.splicing region ) ( >= )
Max Overlap between any isoform and template ( effecting alt.splicing regions ) ( >= )
Abundance Parameters
Total number of EST libraries containing this gene ( >= )
Total number of EST sequencess containg this gene ( >= )
Number of isoforms supported by more than 3 ESTs ( >= )
Number of isoforms supported by more than 5 ESTs ( >= )
Number of isoforms supported by more than 10 ESTs ( >= )
Function Parameters / member of some specific group
Number of medline articles with alt.splicing references ( >= )
AS3D: Alternative Splicing Structural Genomics Projects
CARB/UMBI
AS3D Human
